STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1010KEGG: mav:MAV_1754 DegV family protein; TIGRFAM: degV family protein; PFAM: DegV family protein. (284 aa)    
Predicted Functional Partners:
Srot_1008
PFAM: Phosphoglycerate mutase; KEGG: mgi:Mflv_2655 phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
 
  
 0.976
Srot_0995
PFAM: Dak phosphatase; KEGG: rha:RHA1_ro06515 kinase related to hydroxyacetone kinase.
 
 0.931
Srot_1009
KEGG: rop:ROP_10160 hypothetical protein.
     
 0.897
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
    0.826
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.824
Srot_1011
PFAM: Soluble ligand binding domain; KEGG: mmi:MMAR_3736 membrane protein ComEA.
       0.672
Srot_1012
KEGG: rha:RHA1_ro01291 ComEC operon protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
       0.672
Srot_1005
PFAM: major facilitator superfamily MFS_1; KEGG: rer:RER_55050 drug resistance efflux protein.
       0.596
Srot_1013
PFAM: dienelactone hydrolase; KEGG: sen:SACE_5348 putative carboxymethylenebutenolidase precursor (dienelactone hydrolase) (DLH).
       0.570
Srot_1588
PFAM: glycosyl transferase family 2; KEGG: rop:ROP_60290 putative glucosyl-3- phosphoglycerate synthase.
 
   
 0.445
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.