STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1047TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: mbt:JTY_1315 putative oligopeptide-transport ATP-binding protein ABC transporter; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (623 aa)    
Predicted Functional Partners:
Srot_1048
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rop:ROP_54510 putative ABC transporter permease protein.
  
 0.995
Srot_1121
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro04335 ABC peptide transporter, permease component.
  
 0.977
Srot_3029
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mab:MAB_0721 oligopeptide ABC transporter, permease protein.
  
 0.977
Srot_1049
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro05352 ABC oligopeptide transporter, permease component.
  
 0.968
Srot_1046
PFAM: extracellular solute-binding protein family 5; KEGG: rha:RHA1_ro05349 ABC oligopeptide transporter, permease component.
 
    0.916
Srot_3030
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mab:MAB_0720 oligopeptide ABC transporter, permease protein.
  
 0.854
Srot_0771
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_5620 ABC transporter permease protein.
  
 0.806
Srot_1120
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rop:ROP_42440 putative ABC transporter permease protein.
  
 0.756
Srot_1050
PFAM: major facilitator superfamily MFS_1; KEGG: mab:MAB_0771c major facilitator transporter.
       0.631
Srot_1045
PFAM: Ferritin Dps family protein; KEGG: gbr:Gbro_0470 ferritin Dps family protein; Belongs to the Dps family.
       0.510
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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