Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Srot_1069Conserved hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA. (160 aa)    
Predicted Functional Partners:
Srot_1068
KEGG: rop:ROP_08430 putative acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
       0.816
Srot_0933
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: mab:MAB_3067c hypothetical protein.
  
     0.775
Srot_2634
Chorismate mutase; KEGG: nfa:nfa49960 hypothetical protein; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase, type II.
  
     0.775
Srot_2563
DivIVA domain protein; KEGG: nfa:nfa17740 hypothetical protein; TIGRFAM: DivIVA domain; PFAM: DivIVA family protein.
  
     0.770
Srot_2939
KEGG: mab:MAB_3722 hypothetical protein.
  
     0.765
Srot_1389
KEGG: rha:RHA1_ro01385 hypothetical protein.
  
     0.764
Srot_0958
KEGG: nfa:nfa37720 hypothetical protein.
  
     0.759
Srot_1065
PFAM: glycosyl transferase group 1; KEGG: rer:RER_35870 mannosyltransferase PimB'.
 
     0.754
Srot_2648
PFAM: Protein of unknown function DUF2581; KEGG: mpa:MAP1142 hypothetical protein.
  
     0.754
Srot_1195
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.750
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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