STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1080KEGG: nfa:nfa17590 hypothetical protein. (318 aa)    
Predicted Functional Partners:
Srot_1081
KEGG: rop:ROP_08220 peptidoglycan synthase FtsI; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
 
 0.943
ftsQ
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
   
 
 0.842
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
  
 0.749
mraZ
MraZ protein; KEGG: nfa:nfa17570 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain; Belongs to the MraZ family.
  
  
 0.731
Srot_1091
KEGG: mmi:MMAR_4354 hypothetical protein.
  
     0.730
Srot_0203
KEGG: rop:ROP_39180 hypothetical protein.
  
   
 0.717
Srot_0009
Glycoprotein; KEGG: rha:RHA1_ro03643 glycoprotein.
  
     0.676
Srot_1483
KEGG: mab:MAB_4083c heparin-binding hemagglutinin (adhesin).
  
     0.657
Srot_2961
KEGG: mab:MAB_0122 hypothetical protein.
  
     0.656
Srot_0832
PFAM: extracellular solute-binding protein family 5; KEGG: nfa:nfa47580 hypothetical protein.
  
     0.645
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.