STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1105PFAM: metallophosphoesterase; KEGG: nfa:nfa3370 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Srot_1920
KEGG: mmi:MMAR_2036 hypothetical protein.
  
     0.622
Srot_2740
KEGG: rop:ROP_09260 hypothetical protein.
  
     0.601
Srot_1106
Glycosyl transferase family 51; KEGG: rop:ROP_42240 penicillin-binding protein 1; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; PASTA domain containing protein; SMART: PASTA domain containing protein.
       0.563
Srot_0470
PFAM: DNA polymerase III delta; KEGG: rha:RHA1_ro01286 DNA polymerase III delta subunit.
  
     0.545
Srot_2237
KEGG: msm:MSMEG_4287 integral membrane protein.
  
     0.535
Srot_0846
PFAM: glycosyl transferase family 39; KEGG: rop:ROP_57220 protein O-mannosyltransferase.
  
     0.519
Srot_0965
KEGG: gbr:Gbro_2249 hypothetical protein.
  
     0.518
Srot_3058
Folate-binding protein YgfZ; KEGG: nfa:nfa5830 hypothetical protein; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
  
     0.501
Srot_2846
KEGG: sen:SACE_0629 hypothetical protein.
  
     0.482
Srot_1109
KEGG: mab:MAB_0412 hypothetical protein.
 
     0.456
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.