STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1107PFAM: Anion-transporting ATPase; KEGG: rha:RHA1_ro04317 arsenate (2+)-transporting ATPase. (375 aa)    
Predicted Functional Partners:
Srot_1108
PFAM: Anion-transporting ATPase; KEGG: mgi:Mflv_1368 anion-transporting ATPase.
 
 
 
0.999
Srot_1478
PFAM: protein of unknown function DUF58; KEGG: mab:MAB_2725c hypothetical protein.
  
   
 0.749
purD
TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: rop:ROP_48670 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP- grasp (A) domain; Phosphoribosylglycinamide synthetase, N- domain; Phosphoribosylglycinamide synthetase, C-domain; Belongs to the GARS family.
      
 0.717
Srot_2069
PFAM: Protein of unknown function DUF2596; KEGG: nfa:nfa51910 hypothetical protein.
  
     0.714
Srot_1067
PFAM: cyclase/dehydrase; KEGG: mab:MAB_1981 hypothetical protein.
 
     0.677
Srot_1109
KEGG: mab:MAB_0412 hypothetical protein.
       0.669
Srot_1110
PFAM: Endoribonuclease L-PSP; KEGG: mjl:Mjls_5207 endoribonuclease L-PSP.
       0.669
Srot_1111
Beta-lactamase; KEGG: rer:RER_04690 beta-lactamase.
     
 0.662
Srot_1482
Transcriptional regulator, XRE family; KEGG: mab:MAB_4084c transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.629
Srot_2142
PFAM: ABC-1 domain protein; aminoglycoside phosphotransferase; KEGG: gbr:Gbro_3492 ABC-1 domain protein.
  
     0.609
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.