STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1193PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mbt:JTY_2533 putative lipoprotein. (414 aa)    
Predicted Functional Partners:
Srot_1573
PFAM: Methionine synthase vitamin-B12 independent; KEGG: mbt:JTY_3032 hypothetical protein.
  
     0.637
Srot_3055
Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.634
Srot_0470
PFAM: DNA polymerase III delta; KEGG: rha:RHA1_ro01286 DNA polymerase III delta subunit.
  
     0.612
Srot_1075
PFAM: GCN5-related N-acetyltransferase; KEGG: rer:RER_35660 hypothetical protein.
  
    0.589
Srot_0959
KEGG: mab:MAB_3026c hypothetical protein.
  
     0.560
Srot_0570
KEGG: rer:RER_02120 galactofuranosyltransferase.
  
     0.546
Srot_2206
KEGG: mmi:MMAR_1313 hypothetical protein.
  
     0.536
Srot_2634
Chorismate mutase; KEGG: nfa:nfa49960 hypothetical protein; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase, type II.
  
     0.526
Srot_2770
PFAM: cutinase; KEGG: rop:ROP_39400 hypothetical protein.
  
     0.524
Srot_0628
KEGG: mkm:Mkms_1343 hypothetical protein.
  
     0.496
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.