STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1238KEGG: sen:SACE_7260 putative ABC transporter ATP- binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase. (346 aa)    
Predicted Functional Partners:
Srot_1239
KEGG: rer:RER_14840 ABC transporter permease protein.
 
     0.944
Srot_0985
PFAM: X-Pro dipeptidyl-peptidase domain protein; peptidase S15; KEGG: rop:ROP_23210 hypothetical protein.
 
      0.899
Srot_2136
PFAM: X-Pro dipeptidyl-peptidase domain protein; peptidase S15; KEGG: rha:RHA1_ro02596 ABC transporter ATP-binding protein.
 
      0.899
Srot_1623
KEGG: ami:Amir_6886 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.840
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
       0.748
Srot_1235
Glycine oxidase ThiO; KEGG: rha:RHA1_ro02190 D-amino acid dehydrogenase; TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase.
       0.739
Srot_1236
KEGG: rop:ROP_19040 putative thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein.
       0.723
Srot_0266
KEGG: rop:ROP_34560 putative molybdate ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.720
Srot_1340
KEGG: mav:MAV_4425 ABC-type transporter, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
  
0.648
Srot_1625
KEGG: rop:ROP_50110 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.578
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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