STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1272PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: mmi:MMAR_5058 hypothetical protein. (305 aa)    
Predicted Functional Partners:
Srot_0323
PFAM: Redoxin domain protein; KEGG: mav:MAV_3729 15 kDa antigen.
 
  
 0.705
Srot_1271
PFAM: AMP-dependent synthetase and ligase; KEGG: mab:MAB_2539c fatty-acid-CoA ligase FadD.
       0.615
Srot_1275
KEGG: gbr:Gbro_0591 hypothetical protein.
 
     0.546
Srot_2997
PFAM: protein of unknown function DUF1396; KEGG: mva:Mvan_2692 hypothetical protein.
  
     0.504
Srot_1270
Regulatory protein, FmdB family; KEGG: msm:MSMEG_5479 type I antifreeze protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB.
       0.492
Srot_1333
Transport protein; KEGG: mab:MAB_2301 putative membrane protein, MmpL; TIGRFAM: Transport protein; PFAM: MMPL domain protein.
  
     0.461
Srot_1691
KEGG: gbr:Gbro_1039 cytochrome c-type biogenesis protein CcsB; TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein.
  
  
 0.438
Srot_2998
PFAM: major facilitator superfamily MFS_1; KEGG: mab:MAB_2807 major facilitator transporter.
  
     0.430
Srot_1273
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04995 major facilitator superfamily multidrug resistance protein.
       0.428
Srot_0269
KEGG: sen:SACE_1497 hypothetical protein.
  
     0.420
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.