STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1280KEGG: nfa:nfa43210 hypothetical protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin. (974 aa)    
Predicted Functional Partners:
Srot_0016
Cell wall hydrolase/autolysin; KEGG: msm:MSMEG_6935 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; Peptidoglycan- binding domain 1 protein; SMART: cell wall hydrolase/autolysin.
     
 0.619
Srot_2583
KEGG: nfa:nfa17650 putative cell division protein; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family.
  
  
 0.560
Srot_2658
PFAM: Rhomboid family protein; KEGG: mab:MAB_1481 hypothetical protein.
 
   0.536
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
    0.489
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
     
 0.426
Srot_0298
PFAM: Polyketide cyclase/dehydrase; KEGG: rha:RHA1_ro05063 hypothetical protein.
  
     0.416
Srot_1144
PFAM: UspA domain protein; KEGG: mab:MAB_2312 hypothetical protein.
  
     0.416
Srot_1279
PFAM: small multidrug resistance protein; KEGG: abb:ABBFA_001145 quaternary ammonium compound- resistance protein QacE (Quaternaryammonium determinant E).
       0.414
Srot_1803
KEGG: msm:MSMEG_2936 hydrolase, NUDIX family protein.
 
     0.412
Srot_2997
PFAM: protein of unknown function DUF1396; KEGG: mva:Mvan_2692 hypothetical protein.
  
     0.404
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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