STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1343KEGG: pay:PAU_04009 hypothetical protein. (323 aa)    
Predicted Functional Partners:
Srot_1337
PFAM: AMP-dependent synthetase and ligase; KEGG: saq:Sare_3011 DNA polymerase beta subunit.
     
 0.678
Srot_1338
PFAM: phosphopantetheine-binding; KEGG: sen:SACE_0021 beta keto-acyl synthase.
       0.675
Srot_1339
PFAM: Male sterility domain; KEGG: saq:Sare_3013 hypothetical protein.
       0.675
Srot_1340
KEGG: mav:MAV_4425 ABC-type transporter, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.675
Srot_1341
PFAM: protein of unknown function DUF214; KEGG: mpa:MAP4206c hypothetical protein.
       0.675
Srot_1342
PFAM: protein of unknown function DUF1396; KEGG: mmi:MMAR_1763 lipoprotein LppX.
       0.675
Srot_1344
KEGG: scl:sce8261 polyketide synthase type I; PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Thioesterase.
     
 0.642
Srot_1346
PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; phosphopantetheine-binding; KEGG: pay:PAU_04011 similar to phosphoenolpyruvate synthase.
       0.600
Srot_1345
Amino acid adenylation domain protein; KEGG: sma:SAV_3642 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding.
       0.590
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
  0.588
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.