STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1549KEGG: rop:ROP_66910 putative DtxR family transcriptional regulator; PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor. (233 aa)    
Predicted Functional Partners:
Srot_1883
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mav:MAV_4934 transcriptional regulator, LysR family protein.
  
 
 0.619
Srot_0006
PFAM: protein of unknown function DUF179; KEGG: mbt:JTY_0039 hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.601
argR
Arginine repressor, ArgR; Regulates arginine biosynthesis genes.
     
 0.578
Srot_1550
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
     
 0.551
argG
TIGRFAM: argininosuccinate synthase; KEGG: rer:RER_32780 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.549
argH
KEGG: mmi:MMAR_2469 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.
       0.549
Srot_1554
Hypothetical protein; KEGG: similar to chemokine-like factor super family 4.
       0.549
Srot_0186
KEGG: mgi:Mflv_1142 cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator.
   
    0.521
Srot_0871
Two component transcriptional regulator, winged helix family; KEGG: rer:RER_37220 turgor pressure transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
   
  
 0.495
Srot_2376
Band 7 protein; KEGG: fal:FRAAL4044 membrane protease subunit stomatin/prohibitin-like protein; PFAM: band 7 protein; SMART: band 7 protein.
   
    0.495
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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