STRINGSTRING
Srot_1578 protein (Segniliparus rotundus) - STRING interaction network
"Srot_1578" - Dihydropyrimidinase in Segniliparus rotundus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1578Dihydropyrimidinase; KEGG- bcv-Bcav_2578 dihydropyrimidinase; TIGRFAM- dihydropyrimidinase; PFAM- amidohydrolase (472 aa)    
Predicted Functional Partners:
pyrB
TIGRFAM- aspartate carbamoyltransferase; KEGG- rer-RER_30000 aspartate carbamoyltransferase; PFAM- aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the ATCase/OTCase family (324 aa)
 
 
  0.925
Srot_2913
TIGRFAM- amidase, hydantoinase/carbamoylase family; KEGG- aau-AAur_0749 putative N-carbamoyl-L-amino acid amidohydrolase; PFAM- peptidase M20 (415 aa)
 
   
  0.924
Srot_1579
5,10-methylenetetrahydromethanopterin reductase; KEGG- kra-Krad_4268 luciferase family protein; PFAM- Luciferase-like, subgroup (341 aa)
 
          0.921
Srot_2484
TIGRFAM- amidase, hydantoinase/carbamoylase family; KEGG- rop-ROP_25390 peptidase M20 family protein; PFAM- peptidase M20 (408 aa)
       
  0.905
Srot_2298
TIGRFAM- orotidine 5’-phosphate decarboxylase; KEGG- ami-Amir_5240 orotidine 5’-phosphate decarboxylase; PFAM- Orotidine 5’-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily (291 aa)
   
   
  0.870
carB
KEGG- nfa-nfa36190 carbamoyl phosphate synthase large subunit; TIGRFAM- carbamoyl-phosphate synthase, large subunit; PFAM- Carbamoyl-phosphate synthase L chain ATP- binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; Belongs to the CarB family (1119 aa)
 
 
  0.864
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily (690 aa)
         
  0.857
Srot_2314
KEGG- nfa-nfa36210 hypothetical protein (173 aa)
   
   
  0.753
carA
TIGRFAM- carbamoyl-phosphate synthase, small subunit; KEGG- mav-MAV_3390 carbamoyl phosphate synthase small subunit; PFAM- Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; Belongs to the CarA family (376 aa)
 
   
  0.753
Srot_1580
PFAM- DoxX family protein; KEGG- scl-sce1869 hypothetical protein (157 aa)
              0.644
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus DSM44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
Server load: low (10%) [HD]