STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1630PFAM: protein of unknown function DUF6 transmembrane; KEGG: mab:MAB_0811 membrane protein (resistance to D-cycloserine). (308 aa)    
Predicted Functional Partners:
Srot_1629
Transcriptional regulator, GntR family with aminotransferase domain; KEGG: sco:SCO1587 transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH.
 
   
 0.906
Srot_1631
SMART: Rhodanese domain protein; KEGG: rop:ROP_19530 hypothetical protein.
  
    0.775
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
     
 0.763
Srot_2195
PFAM: protein of unknown function DUF6 transmembrane; KEGG: oan:Oant_1003 hypothetical protein.
  
     0.546
Srot_1633
Histidine kinase; KEGG: nfa:nfa51870 putative two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
  
   0.489
Srot_1634
Two component transcriptional regulator, winged helix family; KEGG: mjl:Mjls_0654 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
       0.460
Srot_1635
PFAM: Ppx/GppA phosphatase; KEGG: mmi:MMAR_0822 hypothetical protein.
       0.460
Srot_1628
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa53620 putative ferredoxin reductase.
       0.454
Srot_0235
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL1243 hypothetical protein.
  
     0.430
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.