STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1663KEGG: nca:Noca_4490 GDSL family lipase. (300 aa)    
Predicted Functional Partners:
Srot_1252
KEGG: gbr:Gbro_1569 membrane-bound lytic murein transglycosylase B-like protein.
 
     0.496
Srot_1664
PFAM: glycosyl transferase family 39; KEGG: nfa:nfa53220 hypothetical protein.
 
     0.480
Srot_0412
KEGG: mab:MAB_3921c hypothetical protein.
  
     0.421
Srot_1665
PFAM: glycosyl transferase family 2; KEGG: msm:MSMEG_4987 glycosyl transferase.
       0.421
Srot_0310
KEGG: nfa:nfa42710 hypothetical protein.
   
 
 0.406
Srot_0342
KEGG: mva:Mvan_4988 hypothetical protein.
   
 
 0.406
Srot_0492
Hypothetical protein; KEGG: sen:SACE_1344 PE-PGRS family protein.
   
 
 0.406
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.