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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1691KEGG: gbr:Gbro_1039 cytochrome c-type biogenesis protein CcsB; TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein. (313 aa)    
Predicted Functional Partners:
Srot_1694
PFAM: Redoxin domain protein; KEGG: mva:Mvan_0866 redoxin domain-containing protein.
  
  
 0.992
Srot_1692
PFAM: ResB family protein; KEGG: mgi:Mflv_0050 ResB family protein.
  
 0.990
Srot_1693
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rha:RHA1_ro02034 cytochrome c biogenesis membrane protein.
 
  
 0.985
Srot_1644
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: rop:ROP_17230 putative uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase.
  
    0.768
hemL
Glutamate-1-semialdehyde-2,1-aminomutase; KEGG: mgi:Mflv_0054 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III.
 
  
 0.711
Srot_1058
PFAM: Cytochrome b/b6 domain; KEGG: mab:MAB_1966c ubiquinol-cytochrome c reductase cytochrome b subunit.
  
  
 0.691
Srot_1695
PFAM: Phosphoglycerate mutase; KEGG: rha:RHA1_ro02036 hypothetical protein.
  
    0.688
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.592
Srot_1057
Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
   
 0.555
Srot_1918
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
  
 0.545
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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