STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1722PFAM: 1, 4-beta cellobiohydrolase; KEGG: mmi:MMAR_0107 cellobiohydrolase A (1,4-beta- cellobiosidase a) CelA; Belongs to the glycosyl hydrolase family 6. (356 aa)    
Predicted Functional Partners:
Srot_2981
PFAM: glycoside hydrolase family 1; KEGG: nfa:nfa26190 putative glycosyl hydrolase; Belongs to the glycosyl hydrolase 1 family.
    
 0.911
Srot_2430
KEGG: mab:MAB_2262c ABC transporter ATP-binding protein; PFAM: ABC transporter related; FAD-binding 9 siderophore-interacting domain protein; Siderophore- interacting protein; ABC transporter transmembrane region; SMART: AAA ATPase.
  
     0.619
Srot_2429
KEGG: mab:MAB_2261c ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.543
Srot_0748
Secretion protein snm4; KEGG: mpa:MAP3786 hypothetical protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.536
Srot_0742
PFAM: protein of unknown function DUF690; KEGG: mkm:Mkms_0381 hypothetical protein.
  
 
   0.530
Srot_0381
PFAM: Siderophore biosynthesis protein, conserved region; KEGG: mjl:Mjls_1700 hypothetical protein.
  
     0.511
Srot_1721
PFAM: major facilitator superfamily MFS_1; KEGG: sen:SACE_3816 major facilitator transporter.
 
     0.505
Srot_1333
Transport protein; KEGG: mab:MAB_2301 putative membrane protein, MmpL; TIGRFAM: Transport protein; PFAM: MMPL domain protein.
  
     0.466
Srot_0141
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mab:MAB_3032 soluble pyridine nucleotide transhydrogenase.
  
   
 0.456
glgE
Alpha amylase catalytic sub domain protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
  
 0.456
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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