STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1777KEGG: nfa:nfa25390 putative urease accessory protein. (212 aa)    
Predicted Functional Partners:
Srot_1408
KEGG: rop:ROP_57430 putative urease accessory protein UreD.
 
 
 0.999
ureC
TIGRFAM: urease, alpha subunit; KEGG: nfa:nfa25260 urease subunit alpha; PFAM: amidohydrolase; Urease alpha-subunit domain protein.
 
 
 0.991
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 0.990
ureB
TIGRFAM: urease, beta subunit; KEGG: rop:ROP_57390 urease beta subunit; PFAM: Urease beta subunit; Belongs to the urease beta subunit family.
  
 
 0.967
ureA
TIGRFAM: urease, gamma subunit; KEGG: mva:Mvan_3084 urease subunit gamma; PFAM: Urease gamma subunit region; Belongs to the urease gamma subunit family.
  
 
 0.915
Srot_1781
PFAM: thioesterase superfamily protein; KEGG: rop:ROP_70420 thioesterase.
       0.614
Srot_0958
KEGG: nfa:nfa37720 hypothetical protein.
  
     0.584
Srot_1369
KEGG: nfa:nfa8240 hypothetical protein.
  
     0.498
Srot_2183
KEGG: mul:MUL_2683 hypothetical protein; Belongs to the HpcH/HpaI aldolase family.
 
     0.453
Srot_0970
PFAM: nucleic acid binding OB-fold tRNA/helicase- type; KEGG: rha:RHA1_ro06832 hypothetical protein.
  
     0.450
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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