STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1981PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rop:ROP_47000 putative carboxylesterase. (353 aa)    
Predicted Functional Partners:
Srot_0131
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro05228 flavin binding monooxygenase.
  
 0.565
Srot_0815
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: mab:MAB_2477c monooxygenase.
  
 0.552
Srot_2767
PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Acyl transferase; Thioesterase; KEGG: rha:RHA1_ro04065 polyketide synthase.
  
 
 0.546
Srot_1980
KEGG: mab:MAB_1195 cystathionine beta-synthase; TIGRFAM: cystathionine beta-synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; CBS domain containing protein.
  
    0.527
Srot_1861
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mbt:JTY_0914 putative monooxygenase.
  
 0.523
Srot_1982
PFAM: protein of unknown function DUF1112; KEGG: mpa:MAP1019 hypothetical protein.
       0.490
Srot_2433
PFAM: Beta-ketoacyl synthase; Acyl transferase; Methyltransferase type 12; phosphopantetheine-binding; KEGG: mab:MAB_2257 polyketide synthase.
  
 
 0.473
Srot_2432
PFAM: Beta-ketoacyl synthase; Thioesterase; Acyl transferase; phosphopantetheine-binding; KEGG: mab:MAB_2256 polyketide synthase.
  
 
 0.455
Srot_0739
PFAM: AMP-dependent synthetase and ligase; KEGG: rop:ROP_23290 2,3-dihydroxybenzoate-AMP ligase.
 
  
 0.444
Srot_1294
PFAM: NmrA family protein; KEGG: sco:SCO1445 hypothetical protein.
  
   0.423
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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