STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_1982PFAM: protein of unknown function DUF1112; KEGG: mpa:MAP1019 hypothetical protein. (276 aa)    
Predicted Functional Partners:
Srot_1983
PFAM: major facilitator superfamily MFS_1; KEGG: rer:RER_15430 drug resistance efflux protein.
       0.505
Srot_1981
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rop:ROP_47000 putative carboxylesterase.
       0.490
Srot_0470
PFAM: DNA polymerase III delta; KEGG: rha:RHA1_ro01286 DNA polymerase III delta subunit.
  
     0.436
Srot_1075
PFAM: GCN5-related N-acetyltransferase; KEGG: rer:RER_35660 hypothetical protein.
  
     0.414
Srot_1920
KEGG: mmi:MMAR_2036 hypothetical protein.
  
     0.411
Srot_1659
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; KEGG: msm:MSMEG_2280 pyruvate dehydrogenase; Belongs to the TPP enzyme family.
   
    0.400
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.