STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2003PFAM: protein of unknown function DUF95 transmembrane; KEGG: mjl:Mjls_5230 hypothetical protein. (330 aa)    
Predicted Functional Partners:
Srot_2002
PFAM: RDD domain containing protein; KEGG: mva:Mvan_5459 RDD domain-containing protein.
 
    0.935
Srot_2004
PFAM: protein of unknown function DUF58; KEGG: mva:Mvan_5456 hypothetical protein.
 
  
 0.815
Srot_2006
KEGG: mab:MAB_0390c hypothetical protein.
 
    0.784
Srot_2007
KEGG: mab:MAB_0391c hypothetical protein.
 
    0.784
Srot_2008
KEGG: mva:Mvan_5452 putative transmembrane protein.
 
     0.769
Srot_2642
KEGG: rer:RER_35140 hypothetical protein.
  
     0.496
Srot_2001
Riboflavin biosynthesis protein RibF; KEGG: rop:ROP_66920 flavokinase/FAD synthetase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; Belongs to the ribF family.
       0.455
Srot_0335
PFAM: RDD domain containing protein; KEGG: sgr:SGR_2715 hypothetical protein.
 
    0.430
Srot_2005
KEGG: mgi:Mflv_1337 ATPase; PFAM: ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase.
 
    0.419
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.