STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2020PFAM: Aldehyde Dehydrogenase; KEGG: mab:MAB_3328 gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (495 aa)    
Predicted Functional Partners:
Srot_2479
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rop:ROP_14830 choline oxidase.
 
 
 0.918
Srot_2477
KEGG: rop:ROP_15570 betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.911
Srot_2793
PFAM: Proline dehydrogenase; KEGG: nfa:nfa23550 putative proline dehydrogenase.
 
 
 0.683
Srot_2021
KEGG: mjl:Mjls_1246 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type.
  
  
 0.548
Srot_2022
PFAM: aminotransferase class-III; KEGG: rha:RHA1_ro05386 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.545
Srot_2023
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: mmi:MMAR_1797 D-alanyl-D-alanine carboxypeptidase DacB; Belongs to the peptidase S11 family.
       0.511
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.