STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2100PFAM: regulatory protein TetR; KEGG: mmi:MMAR_0992 transcriptional regulatory protein. (243 aa)    
Predicted Functional Partners:
Srot_0969
KEGG: rha:RHA1_ro06831 hypothetical protein.
  
    0.627
Srot_0186
KEGG: mgi:Mflv_1142 cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator.
   
    0.619
Srot_1935
KEGG: rop:ROP_63390 putative AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type.
  
    0.567
Srot_1883
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mav:MAV_4934 transcriptional regulator, LysR family protein.
   
 
 0.530
Srot_2330
PFAM: transcriptional regulator PadR family protein; regulatory protein DeoR; KEGG: rop:ROP_69830 putative SufR family transcriptional regulator.
   
  
 0.522
Srot_0006
PFAM: protein of unknown function DUF179; KEGG: mbt:JTY_0039 hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.493
Srot_0748
Secretion protein snm4; KEGG: mpa:MAP3786 hypothetical protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
    0.425
Srot_0780
Putative transcriptional regulator, PucR family; KEGG: sma:SAV_1389 hypothetical protein.
   
    0.410
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.