STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2134PFAM: DSBA oxidoreductase; KEGG: nml:Namu_1686 protein-disulfide isomerase- like protein. (267 aa)    
Predicted Functional Partners:
Srot_1932
KEGG: gbr:Gbro_4263 serine/threonine protein kinase- related protein; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase.
 
    
 0.767
Srot_2135
PFAM: DoxX family protein; KEGG: rer:RER_23300 hypothetical protein.
 
     0.761
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.647
Srot_2133
PFAM: DSBA oxidoreductase; KEGG: gbr:Gbro_3439 hypothetical protein.
 
    
0.580
Srot_2136
PFAM: X-Pro dipeptidyl-peptidase domain protein; peptidase S15; KEGG: rha:RHA1_ro02596 ABC transporter ATP-binding protein.
 
     0.569
Srot_0464
PFAM: Glucose-6-phosphate dehydrogenase subunit; KEGG: rer:RER_30420 OxPP cycle protein OpcA.
  
     0.536
Srot_1053
KEGG: nfa:nfa17040 hypothetical protein.
  
     0.524
Srot_0372
KEGG: nfa:nfa800 putative serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine- protein kinase, subgroup, catalytic domain; PASTA domain containing protein.
 
    
 0.518
Srot_0932
Transcriptional regulator, XRE family; KEGG: gbr:Gbro_2198 helix-turn-helix domain protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.509
Srot_1057
Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.504
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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