STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2136PFAM: X-Pro dipeptidyl-peptidase domain protein; peptidase S15; KEGG: rha:RHA1_ro02596 ABC transporter ATP-binding protein. (589 aa)    
Predicted Functional Partners:
Srot_1436
KEGG: rha:RHA1_ro06015 ABC transporter, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase.
 
      0.900
Srot_1238
KEGG: sen:SACE_7260 putative ABC transporter ATP- binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
      0.899
Srot_2137
Adenosinetriphosphatase; PFAM: AAA ATPase central domain protein; KEGG: nfa:nfa52890 putative AAA ATPase; SMART: AAA ATPase; Belongs to the AAA ATPase family.
       0.661
Srot_2134
PFAM: DSBA oxidoreductase; KEGG: nml:Namu_1686 protein-disulfide isomerase- like protein.
 
     0.569
Srot_2332
KEGG: gbr:Gbro_2380 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
      0.534
Srot_2135
PFAM: DoxX family protein; KEGG: rer:RER_23300 hypothetical protein.
       0.530
Srot_1482
Transcriptional regulator, XRE family; KEGG: mab:MAB_4084c transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.449
Srot_2133
PFAM: DSBA oxidoreductase; KEGG: gbr:Gbro_3439 hypothetical protein.
 
     0.449
Srot_2985
PFAM: protein of unknown function DUF1023; KEGG: bcv:Bcav_3284 protein of unknown function DUF1023.
  
     0.446
Srot_2575
PFAM: protein of unknown function DUF1023; KEGG: rer:RER_03870 hypothetical protein.
  
     0.445
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.