STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2148KEGG: nfa:nfa9540 hypothetical protein. (417 aa)    
Predicted Functional Partners:
Srot_0210
KEGG: rha:RHA1_ro06355 hypothetical protein.
  
     0.775
Srot_0349
KEGG: rer:RER_19100 hypothetical protein.
  
     0.775
Srot_0505
KEGG: nfa:nfa49500 hypothetical protein.
  
     0.775
Srot_1589
TIGRFAM: DivIVA domain; KEGG: nml:Namu_2146 hypothetical protein.
  
     0.775
Srot_1091
KEGG: mmi:MMAR_4354 hypothetical protein.
  
     0.774
Srot_0861
KEGG: mmi:MMAR_1780 hypothetical protein.
  
   
 0.773
Srot_0968
KEGG: msm:MSMEG_2766 hypothetical protein.
  
     0.773
Srot_1758
KEGG: mva:Mvan_3949 hypothetical protein.
  
     0.773
Srot_1619
KEGG: rop:ROP_56200 hypothetical protein.
  
     0.772
Srot_2563
DivIVA domain protein; KEGG: nfa:nfa17740 hypothetical protein; TIGRFAM: DivIVA domain; PFAM: DivIVA family protein.
  
     0.772
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.