STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2180PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_1137 amino acid permease-associated region. (484 aa)    
Predicted Functional Partners:
Srot_2311
PFAM: amino acid permease-associated region; KEGG: rer:RER_29520 amino acid transporter.
  
     0.651
Srot_2478
PFAM: amino acid permease-associated region; KEGG: rha:RHA1_ro01806 amino acid transporter.
  
     0.580
Srot_1385
Alpha amylase catalytic region; KEGG: rha:RHA1_ro01389 alpha-glucosidase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
   
 0.575
glgE
Alpha amylase catalytic sub domain protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.575
Srot_2181
KEGG: msm:MSMEG_3884 hypothetical protein.
       0.535
Srot_2187
PFAM: amino acid permease-associated region; KEGG: rha:RHA1_ro05388 amino acid transporter.
  
     0.443
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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