STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2185TIGRFAM: urate catabolism protein; KEGG: msm:MSMEG_5728 polysaccharide deacetylase family protein; PFAM: polysaccharide deacetylase. (300 aa)    
Predicted Functional Partners:
alc
TIGRFAM: allantoicase; KEGG: rer:RER_47590 allantoicase; PFAM: Allantoicase region; Belongs to the allantoicase family.
 
 0.964
Srot_2183
KEGG: mul:MUL_2683 hypothetical protein; Belongs to the HpcH/HpaI aldolase family.
       0.784
Srot_2182
Beta-lactamase; KEGG: azc:AZC_4278 beta-lactamase precursor; PFAM: beta-lactamase.
       0.773
Srot_2181
KEGG: msm:MSMEG_3884 hypothetical protein.
       0.527
Srot_2484
TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: rop:ROP_25390 peptidase M20 family protein; PFAM: peptidase M20.
    
  0.504
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.