STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2190KEGG: sma:SAV_4173 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Srot_2191
Hypothetical protein; KEGG: rso:RSc2633 putative para-aminobenzoate synthetase component I protein.
       0.773
Srot_2192
Hypothetical protein; KEGG: met:M446_4598 cyclic nucleotide-binding protein.
       0.768
Srot_2189
PFAM: carbon starvation protein CstA; KEGG: mab:MAB_1260c carbon starvation protein (CstA).
       0.709
Srot_2188
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: mva:Mvan_1562 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
       0.660
Srot_2512
PFAM: MgtC/SapB transporter; KEGG: mab:MAB_3593 Mg2+ transport P-type ATPase C MgtC.
  
  
 0.646
Srot_2187
PFAM: amino acid permease-associated region; KEGG: rha:RHA1_ro05388 amino acid transporter.
  
    0.471
Srot_0273
TIGRFAM: glutamate decarboxylase; KEGG: rha:RHA1_ro06016 glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; Belongs to the group II decarboxylase family.
   
  
 0.419
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.