STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2197TIGRFAM: anti-sigma factor; KEGG: mpa:MAP3323c hypothetical protein. (140 aa)    
Predicted Functional Partners:
Srot_2198
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rop:ROP_64020 RNA polymerase ECF-type sigma factor SigH; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
 
 0.980
Srot_1483
KEGG: mab:MAB_4083c heparin-binding hemagglutinin (adhesin).
  
     0.766
Srot_0964
KEGG: mjl:Mjls_2177 hypothetical protein.
  
     0.749
Srot_0203
KEGG: rop:ROP_39180 hypothetical protein.
  
     0.743
Srot_1619
KEGG: rop:ROP_56200 hypothetical protein.
  
     0.734
Srot_0349
KEGG: rer:RER_19100 hypothetical protein.
 
     0.726
Srot_2839
KEGG: mmi:MMAR_1353 hypothetical protein.
  
    0.720
Srot_3049
KEGG: rop:ROP_49410 hypothetical protein.
  
     0.718
Srot_0427
KEGG: mab:MAB_0539 hypothetical protein.
  
     0.713
Srot_1091
KEGG: mmi:MMAR_4354 hypothetical protein.
  
     0.711
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.