STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2204PFAM: fatty acid desaturase; KEGG: nfa:nfa46040 putative fatty acid desaturase. (432 aa)    
Predicted Functional Partners:
Srot_2205
PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: nfa:nfa46020 putative oxidoreductase.
  
 0.977
Srot_0147
KEGG: rha:RHA1_ro06131 hypothetical protein.
  
    0.614
Srot_0768
KEGG: msm:MSMEG_1839 alkane 1-monooxygenase; PFAM: fatty acid desaturase.
  
     0.520
Srot_2203
PFAM: fatty acid desaturase; KEGG: rop:ROP_63970 acyl-CoA desaturase DesA3.
 
    
0.516
Srot_2786
PFAM: Uncharacterised conserved protein UCP07580; KEGG: nfa:nfa30100 hypothetical protein.
  
     0.499
Srot_2785
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gbr:Gbro_4341 ferredoxin.
 
  
 0.450
Srot_0411
PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: mab:MAB_3918c putative oxidoreductase.
  
 0.437
Srot_2161
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mva:Mvan_0259 3-ketoacyl-(acyl-carrier- protein) reductase.
  
 
 
 0.416
Srot_2206
KEGG: mmi:MMAR_1313 hypothetical protein.
       0.415
Srot_2162
PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro05198 MaoC-like dehydratase.
  
     0.413
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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