STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2425PFAM: NAD-dependent epimerase/dehydratase; KEGG: sco:SCO0841 oxidoreductase. (349 aa)    
Predicted Functional Partners:
Srot_2426
PFAM: Abortive infection protein; KEGG: mav:MAV_1282 CAAX amino protease family protein.
 
     0.860
Srot_1059
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: gbr:Gbro_3057 Rieske (2Fe-2S) iron-sulphur domain protein.
  
 
 0.803
Srot_2433
PFAM: Beta-ketoacyl synthase; Acyl transferase; Methyltransferase type 12; phosphopantetheine-binding; KEGG: mab:MAB_2257 polyketide synthase.
   
 0.715
Srot_2432
PFAM: Beta-ketoacyl synthase; Thioesterase; Acyl transferase; phosphopantetheine-binding; KEGG: mab:MAB_2256 polyketide synthase.
   
 0.670
Srot_2767
PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Acyl transferase; Thioesterase; KEGG: rha:RHA1_ro04065 polyketide synthase.
   
 0.660
Srot_0438
PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: sen:SACE_4096 nucleoside-diphosphate sugar epimerase.
 
    0.652
Srot_1058
PFAM: Cytochrome b/b6 domain; KEGG: mab:MAB_1966c ubiquinol-cytochrome c reductase cytochrome b subunit.
   
 
 0.642
Srot_0439
KEGG: ami:Amir_0529 deoxyribodipyrimidine photo- lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein.
 
     0.624
Srot_2087
Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
  0.614
Srot_1346
PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; phosphopantetheine-binding; KEGG: pay:PAU_04011 similar to phosphoenolpyruvate synthase.
  
 0.609
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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