STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2477KEGG: rop:ROP_15570 betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family. (505 aa)    
Predicted Functional Partners:
Srot_2479
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rop:ROP_14830 choline oxidase.
 
 0.986
Srot_2020
PFAM: Aldehyde Dehydrogenase; KEGG: mab:MAB_3328 gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.911
Srot_2474
PFAM: glycine cleavage T protein (aminomethyl transferase); FAD dependent oxidoreductase; Glycine cleavage T-protein barrel; KEGG: mjl:Mjls_2496 FAD dependent oxidoreductase; Belongs to the GcvT family.
 
  
 0.849
Srot_2475
Sarcosine oxidase; KEGG: mgi:Mflv_3081 N-methyltryptophan oxidase; PFAM: FAD dependent oxidoreductase.
  
  
 0.780
Srot_2476
Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: rha:RHA1_ro01810 dioxyenase.
  
  
 0.776
Srot_2478
PFAM: amino acid permease-associated region; KEGG: rha:RHA1_ro01806 amino acid transporter.
  
    0.774
Srot_2793
PFAM: Proline dehydrogenase; KEGG: nfa:nfa23550 putative proline dehydrogenase.
 
 
 0.585
Srot_2473
Transcriptional regulator, IclR family; KEGG: mmi:MMAR_4423 transcriptional regulatory protein; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
     
 0.457
Srot_2472
KEGG: rer:RER_54700 aryl-alcohol dehydrogenase AdhC; TIGRFAM: mycothiol-dependent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
 
 
 0.439
Srot_1314
PFAM: formyl transferase domain protein; KEGG: gbr:Gbro_0633 formyl transferase domain protein.
 
      0.407
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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