STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2540PFAM: MaoC domain protein dehydratase; domain of unknown function DUF1729; Acyl transferase; Beta-ketoacyl synthase; KEGG: rha:RHA1_ro01426 fatty-acyl-CoA synthase. (3073 aa)    
Predicted Functional Partners:
Srot_0378
PFAM: phosphopantetheine-binding; KEGG: msm:MSMEG_2132 acyl carrier protein.
  
 0.999
Srot_1338
PFAM: phosphopantetheine-binding; KEGG: sen:SACE_0021 beta keto-acyl synthase.
  
 0.999
Srot_1346
PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; phosphopantetheine-binding; KEGG: pay:PAU_04011 similar to phosphoenolpyruvate synthase.
  
 0.999
Srot_2432
PFAM: Beta-ketoacyl synthase; Thioesterase; Acyl transferase; phosphopantetheine-binding; KEGG: mab:MAB_2256 polyketide synthase.
  
 0.999
Srot_2433
PFAM: Beta-ketoacyl synthase; Acyl transferase; Methyltransferase type 12; phosphopantetheine-binding; KEGG: mab:MAB_2257 polyketide synthase.
  
 0.999
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.999
Srot_2767
PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Acyl transferase; Thioesterase; KEGG: rha:RHA1_ro04065 polyketide synthase.
 
0.999
Srot_3009
PFAM: phosphopantetheine-binding; KEGG: mab:MAB_3576c phosphopantetheine attachment site domain-containing protein.
  
 0.999
Srot_3011
KEGG: mab:MAB_3574c 3-oxoacyl-[acyl-carrier- protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III.
  
 
 0.999
Srot_2521
KEGG: rop:ROP_70020 enoyl-[acyl-carrier-protein] reductase.
  
  
 0.998
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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