STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2575PFAM: protein of unknown function DUF1023; KEGG: rer:RER_03870 hypothetical protein. (620 aa)    
Predicted Functional Partners:
Srot_2574
Hypothetical protein; KEGG: aeh:Mlg_0917 gamma-glutamyltransferase 2.
       0.773
Srot_2572
KEGG: mav:MAV_1466 hypothetical protein.
       0.620
Srot_2573
KEGG: mav:MAV_1467 hypothetical protein.
       0.620
Srot_3067
KEGG: mab:MAB_4948c hypothetical protein.
  
     0.537
Srot_2521
KEGG: rop:ROP_70020 enoyl-[acyl-carrier-protein] reductase.
      
 0.506
Srot_0985
PFAM: X-Pro dipeptidyl-peptidase domain protein; peptidase S15; KEGG: rop:ROP_23210 hypothetical protein.
  
     0.482
Srot_0743
Cell division FtsK/SpoIIIE; KEGG: mpa:MAP3780 hypothetical protein; PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase.
  
     0.472
Srot_1852
KEGG: rop:ROP_66780 hypothetical protein.
  
     0.466
Srot_2136
PFAM: X-Pro dipeptidyl-peptidase domain protein; peptidase S15; KEGG: rha:RHA1_ro02596 ABC transporter ATP-binding protein.
  
     0.445
Srot_1374
PFAM: Methyltransferase type 11; KEGG: rha:RHA1_ro06454 hypothetical protein.
   
    0.416
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.