STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2603PFAM: protein of unknown function UCP012641; KEGG: mva:Mvan_2631 hypothetical protein. (331 aa)    
Predicted Functional Partners:
Srot_1706
KEGG: msm:MSMEG_3016 hypothetical protein; PFAM: Protein of unknown function DUF2126; transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.
 
     0.585
Srot_2604
KEGG: rha:RHA1_ro04345 hypothetical protein.
       0.553
Srot_2605
KEGG: rop:ROP_42540 hypothetical membrane protein.
       0.553
Srot_2606
KEGG: mbt:JTY_3715 hypothetical protein.
       0.535
Srot_2602
KEGG: cgb:cg0371 cold-shock protein CspA; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.
       0.469
Srot_2607
PFAM: Type II secretion system F domain; KEGG: rha:RHA1_ro04342 hypothetical protein.
       0.441
Srot_2608
KEGG: mbt:JTY_3717 putative transmembrane protein.
       0.441
Srot_2609
PFAM: type II secretion system protein E; KEGG: rop:ROP_42500 hypothetical protein.
       0.441
Srot_2610
KEGG: nfa:nfa3580 hypothetical protein.
       0.441
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.