STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2689PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbr:Gbro_1527 enoyl-CoA hydratase/isomerase. (336 aa)    
Predicted Functional Partners:
Srot_0672
TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: art:Arth_0422 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; Belongs to the HIBADH-related family.
  
 0.970
Srot_2540
PFAM: MaoC domain protein dehydratase; domain of unknown function DUF1729; Acyl transferase; Beta-ketoacyl synthase; KEGG: rha:RHA1_ro01426 fatty-acyl-CoA synthase.
  
 0.769
Srot_2824
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mjl:Mjls_4812 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
   
 0.718
Srot_0479
KEGG: mva:Mvan_2338 lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.716
Srot_0579
TIGRFAM: acetyl-CoA acetyltransferase; KEGG: rer:RER_38940 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.713
Srot_2537
KEGG: gbr:Gbro_4504 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.713
Srot_2160
KEGG: rop:ROP_52500 acetyl-CoA acyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.700
Srot_0839
PFAM: AMP-dependent synthetase and ligase; KEGG: nfa:nfa47430 acyl-CoA synthetase.
   
 
 0.647
glmS
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
    
 0.640
Srot_2690
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro05693 acyl-CoA synthetase.
  
 
 0.604
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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