STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2756PFAM: Phosphoglycerate mutase; KEGG: svi:Svir_13480 fructose-2,6-bisphosphatase. (219 aa)    
Predicted Functional Partners:
Srot_2757
PFAM: aminoglycoside phosphotransferase; KEGG: mxa:MXAN_5897 phosphotransferase enzyme family protein.
 
    0.944
Srot_2758
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro03093 acyl-CoA dehydrogenase.
 
 
   0.884
Srot_0147
KEGG: rha:RHA1_ro06131 hypothetical protein.
 
     0.573
Srot_2759
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rer:RER_30650 oxidoreductase.
  
   0.566
Srot_2162
PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro05198 MaoC-like dehydratase.
  
     0.499
Srot_1289
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_5896 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.460
Srot_2536
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: svi:Svir_30240 short chain enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase.
  
  
 0.413
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.