STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2783PFAM: protein of unknown function DUF1470; KEGG: msm:MSMEG_1531 hypothetical protein. (191 aa)    
Predicted Functional Partners:
Srot_2782
PFAM: protein of unknown function DUF6 transmembrane; KEGG: mab:MAB_3762 hypothetical protein.
 
   
 0.902
Srot_1360
PFAM: protein of unknown function DUF161; KEGG: mgi:Mflv_4274 hypothetical protein.
  
     0.522
Srot_0818
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: mjl:Mjls_5173 peptidase M1, membrane alanine aminopeptidase.
  
     0.507
Srot_0022
PFAM: Anti-sigma K factor RskA; KEGG: mva:Mvan_4928 hypothetical protein.
  
     0.478
Srot_1359
Transcriptional regulator, GntR family with aminotransferase domain; KEGG: mab:MAB_3387 GntR family regulatory protein; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH.
  
     0.446
Srot_2779
PFAM: ribonuclease BN; KEGG: msm:MSMEG_1658 ribonuclease, putative.
       0.422
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.422
Srot_2781
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: rop:ROP_62990 exodeoxyribonuclease; PFAM: Endonuclease/exonuclease/phosphatase.
       0.422
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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