STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2793PFAM: Proline dehydrogenase; KEGG: nfa:nfa23550 putative proline dehydrogenase. (329 aa)    
Predicted Functional Partners:
Srot_2794
KEGG: rha:RHA1_ro05951 1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase.
 0.999
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 0.967
Srot_0527
TIGRFAM: proline iminopeptidase; KEGG: gbr:Gbro_3091 proline iminopeptidase; PFAM: alpha/beta hydrolase fold; Belongs to the peptidase S33 family.
     
 0.900
Srot_2792
Methyltransferase; KEGG: nfa:nfa41900 hypothetical protein; TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative.
       0.773
Srot_2020
PFAM: Aldehyde Dehydrogenase; KEGG: mab:MAB_3328 gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.683
Srot_2167
PFAM: Na+/solute symporter; KEGG: acr:Acry_2953 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.656
Srot_2172
PFAM: Na+/solute symporter; KEGG: msm:MSMEG_4462 sodium:solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.656
Srot_1937
PFAM: Aldehyde Dehydrogenase; KEGG: rop:ROP_63370 piperideine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.633
Srot_2059
KEGG: nfa:nfa29950 putative aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.609
Srot_2477
KEGG: rop:ROP_15570 betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.585
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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