STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2820Methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity. (300 aa)    
Predicted Functional Partners:
Srot_2819
Methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
 
    
0.712
Srot_0748
Secretion protein snm4; KEGG: mpa:MAP3786 hypothetical protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.651
Srot_2821
PFAM: glycoside hydrolase family 3 domain protein; KEGG: rer:RER_11170 glycosidase.
       0.613
Srot_2061
KEGG: sma:SAV_4727 hypothetical protein.
  
     0.575
Srot_0634
KEGG: cai:Caci_8255 hypothetical protein.
  
     0.529
Srot_1003
PFAM: Methyltransferase type 12; KEGG: mab:MAB_0961c hypothetical protein.
  
     0.502
Srot_1464
PFAM: putative esterase; KEGG: mab:MAB_2451c hypothetical protein.
  
     0.479
Srot_1679
Thioester reductase domain protein; KEGG: mab:MAB_4714c fatty-acid-CoA ligase FadD; TIGRFAM: thioester reductase domain protein; PFAM: Male sterility domain; AMP-dependent synthetase and ligase; phosphopantetheine-binding.
  
     0.467
Srot_0742
PFAM: protein of unknown function DUF690; KEGG: mkm:Mkms_0381 hypothetical protein.
  
     0.461
Srot_1581
PFAM: protein of unknown function DUF1275; KEGG: mbt:JTY_0132 putative transmembrane protein.
  
     0.449
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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