STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2869KEGG: mab:MAB_1249 hypothetical protein. (193 aa)    
Predicted Functional Partners:
Srot_2868
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mab:MAB_1248 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.775
Srot_2870
KEGG: msm:MSMEG_6147 hypothetical protein.
       0.529
Srot_2866
KEGG: mab:MAB_1246c hypothetical protein.
       0.527
Srot_2867
PFAM: protein of unknown function DUF322; KEGG: mab:MAB_1247c hypothetical protein.
       0.527
Srot_2862
KEGG: mab:MAB_1242c hypothetical protein.
       0.478
Srot_2863
KEGG: mab:MAB_1243c hypothetical protein.
       0.478
Srot_2864
KEGG: mab:MAB_1244c hypothetical protein.
       0.478
Srot_2865
KEGG: mab:MAB_1245c hypothetical protein.
       0.478
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.