STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2962PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: nfa:nfa1250 putative glycerophosphoryl diester phosphodiesterase. (253 aa)    
Predicted Functional Partners:
Srot_1789
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: mjl:Mjls_5119 glycerophosphoryl diester phosphodiesterase.
  
  
  0.930
Srot_2066
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sen:SACE_6355 glycerophosphoryl diester phosphodiesterase.
  
  
 
0.921
Srot_2881
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: met:M446_4745 glycerophosphoryl diester phosphodiesterase.
  
  
 
0.905
Srot_0146
Hypothetical protein; KEGG: mjl:Mjls_5119 glycerophosphoryl diester phosphodiesterase.
     
  0.900
Srot_2961
KEGG: mab:MAB_0122 hypothetical protein.
       0.768
Srot_2960
PFAM: peptidase S49; KEGG: ami:Amir_0066 peptidase S49.
       0.757
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
      0.576
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.489
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.475
Srot_0759
PFAM: FAD dependent oxidoreductase; KEGG: mgi:Mflv_4821 FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
 
 0.450
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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