STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_3003PFAM: short-chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_0863 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (312 aa)    
Predicted Functional Partners:
Srot_2540
PFAM: MaoC domain protein dehydratase; domain of unknown function DUF1729; Acyl transferase; Beta-ketoacyl synthase; KEGG: rha:RHA1_ro01426 fatty-acyl-CoA synthase.
  
 0.911
Srot_3002
PFAM: regulatory protein TetR; KEGG: mab:MAB_0647 transcriptional regulator TetR.
       0.553
Srot_2767
PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Acyl transferase; Thioesterase; KEGG: rha:RHA1_ro04065 polyketide synthase.
  
 
 0.547
Srot_2657
PFAM: cytochrome P450; KEGG: mav:MAV_3927 cytochrome P450.
  
 
 0.525
Srot_2319
PFAM: short-chain dehydrogenase/reductase SDR; alpha/beta hydrolase fold; KEGG: gbr:Gbro_4339 short-chain dehydrogenase/reductase SDR.
 
 
 0.521
Srot_2432
PFAM: Beta-ketoacyl synthase; Thioesterase; Acyl transferase; phosphopantetheine-binding; KEGG: mab:MAB_2256 polyketide synthase.
  
 
 0.504
Srot_1903
PFAM: sulfatase; KEGG: mab:MAB_4469c sulfatase family protein.
   
 
 0.502
Srot_2946
PFAM: sulfatase; KEGG: mab:MAB_4469c sulfatase family protein.
   
 
 0.502
Srot_0213
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mab:MAB_3947 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.499
Srot_0318
KEGG: mab:MAB_2212 polyketide synthase; PFAM: Beta-ketoacyl synthase; Acyl transferase; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KR domain protein; phosphopantetheine-binding.
  
 
 0.484
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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