STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_3018PFAM: cyclase family protein; KEGG: mab:MAB_3566c putative cyclase. (326 aa)    
Predicted Functional Partners:
Srot_3019
PFAM: dienelactone hydrolase; KEGG: mab:MAB_3564c dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein.
 
     0.840
Srot_3020
PFAM: regulatory protein TetR; KEGG: mab:MAB_3565 TetR family transcriptional regulator.
       0.544
Srot_2421
Biphenyl-2,3-diol 1,2-dioxygenase; KEGG: hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.518
Srot_2422
PFAM: monooxygenase FAD-binding; KEGG: scl:sce6695 PheA/TfdB family FAD-binding monooxygenase.
 
     0.425
Srot_1726
PFAM: monooxygenase FAD-binding; KEGG: mva:Mvan_4906 3-(3-hydroxyphenyl)propionate hydroxylase.
 
     0.422
Srot_1724
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; peptidase M42 family protein; KEGG: mva:Mvan_4908 glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.406
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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