STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_3058Folate-binding protein YgfZ; KEGG: nfa:nfa5830 hypothetical protein; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family. (338 aa)    
Predicted Functional Partners:
Srot_3057
KEGG: prw:PsycPRwf_1942 hypothetical protein.
       0.762
Srot_1054
KEGG: mav:MAV_2287 HesB/YadR/YfhF family protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
 
 
 0.644
Srot_3056
PFAM: aminotransferase class IV; KEGG: rer:RER_48190 aminotransferase.
       0.622
Srot_3059
KEGG: mbt:JTY_0832 hypothetical protein.
       0.618
Srot_1920
KEGG: mmi:MMAR_2036 hypothetical protein.
  
     0.524
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
  
     0.522
Srot_1105
PFAM: metallophosphoesterase; KEGG: nfa:nfa3370 hypothetical protein.
  
     0.501
Srot_2140
KEGG: mkm:Mkms_1431 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Protein of unknown function DUF2342.
  
     0.493
Srot_2740
KEGG: rop:ROP_09260 hypothetical protein.
  
     0.486
Srot_2212
Integral membrane sensor signal transduction histidine kinase; KEGG: rha:RHA1_ro06325 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.
  
     0.484
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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