STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF05874.1Ca-activated chloride channel family protein. (343 aa)    
Predicted Functional Partners:
SDG49480.1
Protoporphyrin IX magnesium-chelatase.
  
 0.975
SDF05968.1
MoxR-like ATPase.
 
 
 0.965
SDF05828.1
Ca-activated chloride channel family protein.
   
 0.957
SDF05934.1
Protein of unknown function DUF58.
 
  
 0.957
SDF05790.1
Oxygen tolerance.
 
   
 0.954
SDF05902.1
Protein of unknown function.
 
     0.920
SDF05765.1
Transcriptional regulator, AraC family.
       0.779
SDE85057.1
MoxR-like ATPase.
 
 
 0.768
SDG49709.1
Cobaltochelatase CobN subunit.
  
 0.762
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.746
Your Current Organism:
Pseudomonas seleniipraecipitans
NCBI taxonomy Id: 640205
Other names: LMG 25475, LMG:25475, NRRL B-51283, P. seleniipraecipitans, Pseudomonas seleniipraecipitans corrig. Hunter and Manter 2011, Pseudomonas seleniipraecipitatus, Pseudomonas sp. CA5, strain CA5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.