STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF22841.1Putative 3TM holin, Phage_holin_3. (104 aa)    
Predicted Functional Partners:
SDF22873.1
Putative phage holin.
       0.785
SDF22781.1
Hypothetical protein.
       0.626
SDF22810.1
Hypothetical protein.
       0.594
SDF22906.1
Hypothetical protein.
       0.411
SDF22753.1
Phage DNA packaging protein, Nu1 subunit of terminase.
       0.402
Your Current Organism:
Pseudomonas seleniipraecipitans
NCBI taxonomy Id: 640205
Other names: LMG 25475, LMG:25475, NRRL B-51283, P. seleniipraecipitans, Pseudomonas seleniipraecipitans corrig. Hunter and Manter 2011, Pseudomonas seleniipraecipitatus, Pseudomonas sp. CA5, strain CA5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.