STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF85641.1PelD GGDEF domain-containing protein. (455 aa)    
Predicted Functional Partners:
SDF85605.1
Hypothetical protein.
 
 
 0.984
SDF85670.1
Hypothetical protein.
 
 
 0.973
SDF85538.1
Hypothetical protein.
 
   
 0.947
SDF85578.1
Tetratricopeptide repeat-containing protein.
 
   
 0.942
SDF85709.1
Uncharacterized membrane protein.
 
   
 0.840
SDE96900.1
Signal transduction histidine kinase.
    
 0.835
SDE91114.1
Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
   
 0.811
SDG20704.1
Signal transduction histidine kinase.
   
 0.809
SDE90697.1
GAF domain-containing protein.
   
 0.790
SDF73716.1
Na+/proline symporter.
   
 0.787
Your Current Organism:
Pseudomonas seleniipraecipitans
NCBI taxonomy Id: 640205
Other names: LMG 25475, LMG:25475, NRRL B-51283, P. seleniipraecipitans, Pseudomonas seleniipraecipitans corrig. Hunter and Manter 2011, Pseudomonas seleniipraecipitatus, Pseudomonas sp. CA5, strain CA5
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