STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF97077.1Two component transcriptional regulator, winged helix family. (244 aa)    
Predicted Functional Partners:
SDE96900.1
Signal transduction histidine kinase.
 
 0.990
SDF97117.1
Signal transduction histidine kinase.
 
 0.989
SDE95206.1
Multi-sensor hybrid histidine kinase.
 
0.980
SDG08145.1
Signal transduction histidine kinase.
 0.980
SDE99153.1
Hypothetical protein.
 0.979
SDE91201.1
PAS/PAC sensor hybrid histidine kinase.
 0.978
SDE99128.1
Hypothetical protein.
 
0.977
SDF73716.1
Na+/proline symporter.
  
 0.976
SDF00504.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.975
SDE90953.1
PAS domain S-box-containing protein.
 
 0.971
Your Current Organism:
Pseudomonas seleniipraecipitans
NCBI taxonomy Id: 640205
Other names: LMG 25475, LMG:25475, NRRL B-51283, P. seleniipraecipitans, Pseudomonas seleniipraecipitans corrig. Hunter and Manter 2011, Pseudomonas seleniipraecipitatus, Pseudomonas sp. CA5, strain CA5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.